PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010098614.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 277aa    MW: 31686 Da    PI: 8.255
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010098614.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.7e-06134153120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ C k+F+r  nL+ H+
  XP_010098614.1 134 FSCHVCFKTFNRYNNLQMHM 153
                     89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.56E-5128156No hitNo description
PROSITE profilePS5015710.055134161IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-4134153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280136156IPR007087Zinc finger, C2H2
SuperFamilySSF576672.24E-5200238No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEYFSETTNS SISTSSYYRQ PFISKDNDIE GNKPLDLFPN EKQNDLEPLP LISCLLRSPE  60
QPAYENPKAC SNLEVIDHNE DVTVALHIGL PEYSPDHYGF IMDSNGTPDP NDVAAAEKYW  120
IPTPEQILIG FTHFSCHVCF KTFNRYNNLQ MHMWGHGSQY RRGPESLKGT QPRVMLGIPC  180
YCCAEGCKNN IEHPRAKPLK DFRTLQTHYK RKHGMKPFTC RKCGKLLAVK GDWRTHEKNC  240
GKRWLCVCGS DFKHKRSLKD HIKAFGSGHS PFPPSSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098614.10.0Protein TRANSPARENT TESTA 1
SwissprotQ8VWG31e-115TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLW9R7W20.0W9R7W2_9R
STRINGVIT_18s0001g05860.t011e-121(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-109C2H2 family protein